Tutorials

Hands-on tutorials for CompOmics proteomics tools and workflows.

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Tutorials

Hands-on, step-by-step guides and walkthroughs for CompOmics proteomics tools and workflows. Each tutorial pairs practical examples with the underlying methods.

PSM Rescoring with MS²Rescore

Download a real HeLa LC-MS/MS dataset and rescore MaxQuant PSMs using MS2PIP fragment ion predictions, DeepLC retention time predictions, and mokapot — gaining +16 % identifications at 1 % FDR.

Jun 11, 2026

Multi-modal Peptide Property Prediction with CompOmics Tools

Predict fragment ion intensities (MS2PIP), retention times (DeepLC), and ion mobility / CCS values (IM2Deep) for any peptide sequence.

Jun 10, 2026

The original hands-on CompOmics course on mass spectrometry-based proteomics data analysis: identification, functional analysis, data sharing, and quantification. Slides and exercise resources included. A modernised version is in preparation.

Jun 1, 2026

PSM Rescoring with MS²Rescore

Multi-modal Peptide Property Prediction with CompOmics Tools

Bioinformatics for Proteomics