University of Cape Town – Proteomic Bioinformatics Workshop – September 2012

Presentations

  • Day 1
    • Introduction to mass spectrometry and proteomics (PDF) link
    • Peptide and protein identification (PDF) link
    • Assessing identification reliability (PDF) link
  • Day 2
    • Databases and protein inference (PDF) link
    • Quantification using mass spectrometry based proteomics (PDF) link
    • Elementary study design considerations (PDF) link
  • Day 3
    • Own data and questions
    • Continue practicals

Practicals: tutorial text and materials

      • Practical 0: Introduction
        • Tutorial text (PDF) link
      • Practical 1: Database generation
        • Tutorial text (PDF) link
      • Practical 2: Peak list generation
        • Tutorial text (PDF) link
        • Materials (zip file) link
      • Practical 3: Peptide to spectrum matching
        • Tutorial text (PDF) link
        • Materials (zip file) link
      • Practical 4: Identification results
        • Tutorial text (PDF) link
        • Materials (zip file) link
      • Practical 5: Peptide and protein validation
        • Tutorial text (PDF) link
        • Materials (zip file) link
      • Extra Practical: External resources
        • Tutorial text (PDF) link
        • Materials (zip file) link

Practicals: software download links

  • list of software applications (all zip files) link