Supporting material for the protein inference practical
- Excel document with peptide identifications: http://genesis.ugent.be/files/kvcv_workshop/example protein inference.xls
Supporting material for the MS/MS Identification practical
- The secrets behind the search engines presentation (PDF file): http://genesis.ugent.be/files/martens_search_engines_20110418.pdf
- practical text (PDF file): http://genesis.ugent.be/files/kvcv_workshop/msms_identification.pdf
- SearchGUI website: http://code.google.com/p/searchgui
- OMSSA Parser website: http://code.google.com/p/omssa-parser/
- X!Tandem Parser website: http://code.google.com/p/xtandem-parser/
- UniProtKB/Swiss-Prot Yeast search database in FASTA format: http://genesis.ugent.be/files/kvcv_workshop/uniprot_sprot_yeast09_02.fasta (right-click and choose ‘Save as…’)
- Yeast MS/MS spectra in MGF format: http://genesis.ugent.be/files/kvcv_workshop/input_spectra.mgf (right-click and choose ‘Save as…’)
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Supporting material for the Peptizer practical
- Peptizer presentation slides: peptizer_workshop_20110919
- Peptizer practical: kvcv_peptizer_workshop_110919
- Peptizer project website: http://code.google.com/p/peptizer/
- application
- user manual
- source code
- issues - Peptizer example data: http://sites.google.com/p/peptizer/
