Twitter Updates
- Lastly: a Commentary. My appreciation for the heroic efforts of the @pride_ebi team to safeguard Peptidome data. ncbi.nlm.nih.gov/pubmed/23596016 3 weeks ago
- Collaborative work with the group of @jvdesomp We provide a reanalysis pipeline to detect coding lncRNAs. ncbi.nlm.nih.gov/pubmed/23042674 3 weeks ago
- Now a research paper; using protein 3D structure to analyze MS proteomics derived phospho sites. ncbi.nlm.nih.gov/pubmed/23172737 3 weeks ago
Free CompOmics Software
- cell-motility
- DBToolkit DBToolkit
- Fragmentation Analyzer
- iceLogo iceLogo java program
- iceLogo web application iceLogo web application
- jmzML
- jsparklines jSparkLines implementation
- jTraML Java parser for the TraML standard file format for communicating about SRM assays input files.
- mascotdatfile
- ms-lims
- OLS Dialog
- OMSSA GUI
- OMSSA parser
- peptizer
- PRIDE Converter
- rover
- searchGUI searchGUI
- thermo msf parser The Thermo ProteomeDiscoverer? program is a proteomics tool that integrates both the peptide identification and quantification steps in peptide centric proteomics into a single workflow. This makes it one of the preferred programs to analyse proteomics da
- XTandem parser
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Recent Posts
Category Archives: 2009
PRIDE Converter: making proteomics data-sharing easy
PRIDE Converter converts mass spectrometry data from most common data formats into valid PRIDE XML for submission to the publicly available PRIDE database. It presents a convenient, wizard-like graphical user interface, and includes efficient access to the Ontology Lookup Service (OLS). … Continue reading
Posted in 2009, Publications
OMSSA Parser: an open-source library to parse and extract data from OMSSA MS/MS search results
Protein identification by MS is an important technique in both gel-based and gel-free proteome studies. The Open Mass Spectrometry Search Algorithm (OMSSA) (http://pubchem.ncbi.nlm.nih.gov/omssa) is an open-source search engine that can be used to identify MS/MS spectra acquired in these experiments. … Continue reading
Posted in 2009, Publications
